PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00136485001
Common NameGSBRNA2T00136485001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 515aa    MW: 56710.5 Da    PI: 10.2448
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00136485001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.5e-0582104123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++C+k F r  nL+ H r H
  GSBRNA2T00136485001  82 FVCEICNKGFQRDQNLQLHRRGH 104
                          89*******************88 PP

2zf-C2H2157.2e-05167189123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC++C+k +  +s+ k H +t+
  GSBRNA2T00136485001 167 FKCEKCSKKYAVQSDWKAHAKTC 189
                          89******************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.76E-881104No hitNo description
Gene3DG3DSA:3.30.160.601.7E-581104IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.01782104IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.94982104IPR007087Zinc finger, C2H2
PfamPF121718.2E-582104IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS00028084104IPR007087Zinc finger, C2H2
SMARTSM0035573132162IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.3E-5155188IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.76E-8162187No hitNo description
SMARTSM0035592167187IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MQMIPGDPFS ISSSMGGFVH QEQHLHHLQQ HIQDINPNSN PNPNAKPNSS SAKKKRNQPG  60
TPDPDADVIA LSPTTLMATN RFVCEICNKG FQRDQNLQLH RRGHNLPWKL KQRSNKELKQ  120
RSNKEVIKKK VYICPIKTCV HHDSSRALGD LTGIKKHYSR KHGEKKFKCE KCSKKYAVQS  180
DWKAHAKTCG TREYKCDCGT LFSRKDSFIT HRAFCDALTE EGARMSSLSN NSAISTTTMT  240
TNLNFGNDSH VMNNSNLPHG FVHRGVHHPD INAAISQFGL GFGHDLTGMH PQGLSEMVQM  300
TSSGNHHLFP LSSSSVLPDF SGHHHNQQFQ IPTTSTTSQQ TSASLPSLQQ QHQTLKDSSF  360
SPLFSSSSET KQNKPLSPMS ATALLQKAAQ MGSTRSNSTT APSIFAGPTM TSSSSAASPP  420
PRSSSPMMIQ QQLNNNFNTN VPREIHNLAP PSSGVTTNNV DNNHRFQSNR SGITPVQQMG  480
LTRDFLGVSN EHHPHQTGHR PFLPQELARF APSG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00136485001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ6214940.0AJ621494.1 Arabidopsis thaliana mRNA for ID1-like zinc finger protein 3 (idz3 gene).
GenBankAJ6304930.0AJ630493.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At5g03150.
GenBankAK2288950.0AK228895.1 Arabidopsis thaliana mRNA for hypothetical protein, partial cds, clone: RAFL16-21-B02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013686539.10.0PREDICTED: zinc finger protein JACKDAW isoform X1
SwissprotQ700D20.0IDD10_ARATH; Zinc finger protein JACKDAW
TrEMBLA0A078C5Q10.0A0A078C5Q1_BRANA; BnaA10g26770D protein
STRINGBra009549.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03150.10.0C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]